BtaEX6088278 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002036 | CACNB1
Description
Bos taurus calcium channel, voltage-dependent, beta 1 subunit (CACNB1), mRNA. [Source:RefSeq mRNA;Acc:NM_175819]
Coordinates
chr19:40306177-40310173:+
Coord C1 exon
chr19:40306177-40306328
Coord A exon
chr19:40309461-40309556
Coord C2 exon
chr19:40309988-40310173
Length
96 bp
Sequences
Splice sites
3' ss Seq
CTTTTCCCCTTACCAAACAGGTT
3' ss Score
10.38
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
Exon sequences
Seq C1 exon
CTGAGGTTCAGAGCGAGATCGAGCGGATCTTTGAGCTAGCCCGAACCCTTCAGTTGGTTGCTCTGGACGCCGACACCATCAACCATCCAGCCCAGCTCTCCAAGACCTCACTGGCCCCCATCATTGTTTACATCAAGATCACCTCTCCTAAG
Seq A exon
GTTCTTCAGAGGCTCATCAAGTCTCGAGGGAAGTCTCAGTCCAAACACCTCAACGTCCAAATAGCGGCCTCAGAGAAACTGGCGCAGTGTCCCCCT
Seq C2 exon
GAGATGTTTGACATCATCCTGGATGAGAACCAATTGGAGGACGCCTGCGAGCACTTGGCAGAGTACTTGGAAGCCTATTGGAAGGCTACACACCCGCCCAGCAGCACTCCGCCCAATCCGCTGCTGAACCGCACCATGGCTACTGCAGCCCTGGCTGCCAGCCCTGCCCCTGTCTCCAACCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002036-'13-21,'13-20,15-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.394
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=FE(27.6=100)
A:
PF0062516=Guanylate_kin=FE(17.1=100)
C2:
PF0062516=Guanylate_kin=PD(13.8=25.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTTCAGTTGGTTGCTCTGG
R:
AGGCTTCCAAGTACTCTGCCA
Band lengths:
183-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]