DreEX6015707 @ danRer10
Exon Skipping
Gene
ENSDARG00000002167 | cacnb1
Description
calcium channel, voltage-dependent, beta 1 subunit [Source:ZFIN;Acc:ZDB-GENE-040718-399]
Coordinates
chr3:16011814-16015429:-
Coord C1 exon
chr3:16015278-16015429
Coord A exon
chr3:16015078-16015173
Coord C2 exon
chr3:16011814-16011999
Length
96 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTCTCTCTCTATCAGGTG
3' ss Score
12.83
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
Exon sequences
Seq C1 exon
CTGAGGTACAGAGTGAAATCGAGAGAATCTTTGAGCTGGCTCGGACGCTTCAGTTAGTGGCTCTGGATGCAGACACAATTAACCATCCATCTCAACTGGCCAAGACCTCACTGGCACCAATCATAGTCTATATCAAGATCGCCTCTCCAAAG
Seq A exon
GTGTTGCAGAGGCTGATAAAGTCCAGGGGAAAATCTCAGGCCAAACATCTCAATGTCCAAATGGTGGCAGCTGATAAACTGGCACAATGTCCTCCT
Seq C2 exon
GAGCTGTTTGACATAATCTTAGATGAGAATCAGCTGGAGGATGCGTGTGAACATCTGGCTGAATACCTGGAAGCTTACTGGAAGGCCACACATCCACCAAGCAGCAACCCGCCCAACCCTCTGCTGAACCGCACCATGGCCACAGCCGCCCTGGCCGCTTCGCCCGAACCCGTCTCCAACCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000002167-'17-21,'17-20,18-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.473
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=FE(27.2=100)
A:
PF0062516=Guanylate_kin=FE(16.8=100)
C2:
PF0062516=Guanylate_kin=PD(13.8=40.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACGCTTCAGTTAGTGGCTC
R:
AGCCAGATGTTCACACGCATC
Band lengths:
170-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]