GgaEX0018911 @ galGal3
Exon Skipping
Gene
ENSGALG00000012511 | B6IDG6_CHICK
Description
NA
Coordinates
chr7:36958230-36965857:-
Coord C1 exon
chr7:36965706-36965857
Coord A exon
chr7:36963094-36963189
Coord C2 exon
chr7:36958230-36958415
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTCCTCTTTTCCTCTATCAGGTT
3' ss Score
11.14
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
CTGAAGTGCAGAGTGAGATTGAAAGAATCTTTGAGCTGGCCCGGTCCTTGCAGCTGGTTGTCCTGGATGCAGACACTATCAATCACCCCGCACAACTTATCAAGACATCTCTAGCACCAATTATTGTCCACGTTAAAGTGTCTTCTCCAAAG
Seq A exon
GTTTTGCAGCGACTGATTAAATCTAGAGGAAAGTCACAAAGTAAACACTTGAATGTTCAGTTGGTGGCAGCTGATAAACTTGCACAATGCCCACCA
Seq C2 exon
GAGATGTTTGATGTAATTTTGGATGAAAACCAGCTCGAAGATGCTTGCGAACACTTGGCGGAGTACCTGGAGGCGTACTGGCGTGCTACGCACACCACCAGTAGCACACCCATGACTCCTCTTCTCGGGAGAAACTTAGGATCCACTGCACTGTCCCCATACCCTGCTGCGATCTCTGGACTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012511-'12-16,'12-14,13-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.198
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=FE(27.6=100)
A:
PF0062516=Guanylate_kin=FE(17.1=100)
C2:
PF0062516=Guanylate_kin=PD(13.8=40.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTTGTCCTGGATGCAGAC
R:
CAGGTACTCCGCCAAGTGTTC
Band lengths:
168-264
Functional annotations
There are 0 annotated functions for this event