GgaEX0018911 @ galGal4
Exon Skipping
Gene
ENSGALG00000012511 | CACNB4
Description
voltage-dependent L-type calcium channel subunit beta-4 isoform c [Source:RefSeq peptide;Acc:NP_989675]
Coordinates
chr7:34833388-34841015:-
Coord C1 exon
chr7:34840864-34841015
Coord A exon
chr7:34838252-34838347
Coord C2 exon
chr7:34833388-34833573
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTCCTCTTTTCCTCTATCAGGTT
3' ss Score
11.14
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
CTGAAGTGCAGAGTGAGATTGAAAGAATCTTTGAGCTGGCCCGGTCCTTGCAGCTGGTTGTCCTGGATGCAGACACTATCAATCACCCCGCACAACTTATCAAGACATCTCTAGCACCAATTATTGTCCACGTTAAAGTGTCTTCTCCAAAG
Seq A exon
GTTTTGCAGCGACTGATTAAATCTAGAGGAAAGTCACAAAGTAAACACTTGAATGTTCAGTTGGTGGCAGCTGATAAACTTGCACAATGCCCACCA
Seq C2 exon
GAGATGTTTGATGTAATTTTGGATGAAAACCAGCTCGAAGATGCTTGCGAACACTTGGCGGAGTACCTGGAGGCGTACTGGCGTGCTACGCACACCACCAGTAGCACACCCATGACTCCTCTTCTCGGGAGAAACTTAGGATCCACTGCACTGTCCCCATACCCTGCTGCGATCTCTGGACTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012511_MULTIEX1-6/6=5-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.226
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=FE(27.6=100)
A:
PF0062516=Guanylate_kin=FE(17.1=100)
C2:
PF0062516=Guanylate_kin=PD(13.8=40.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTTGTCCTGGATGCAGAC
R:
CAGGTACTCCGCCAAGTGTTC
Band lengths:
168-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]