DreEX0018236 @ danRer10
Exon Skipping
Gene
ENSDARG00000009738 | cacnb4a
Description
calcium channel, voltage-dependent, beta 4a subunit [Source:ZFIN;Acc:ZDB-GENE-080320-2]
Coordinates
chr9:38314450-38315869:+
Coord C1 exon
chr9:38314450-38314601
Coord A exon
chr9:38315038-38315133
Coord C2 exon
chr9:38315684-38315869
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTTGGTGTGTTTGCTTACAGGTA
3' ss Score
10.07
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
Exon sequences
Seq C1 exon
CGGAGGTTCAGAGTGAGATCGAGCGGATCTTTGAATTGGCCAGATCCCTTCAGCTGGTTGTTCTCGATGCCGACACGATCAACCATCCTGCCCAGCTCATCAAGACTTCTTTAGCTCCCATTATTGTCCATGTTAAAGTGTCTTCTCCCAAG
Seq A exon
GTATTACAACGGCTGATTAAATCAAGAGGAAAGTCTCAGAGCAAGCATTTAAATGTACAACTGGTGGCAGCAGACAAATTAGCTCAGTGCCCTCCA
Seq C2 exon
GAGATGTTTGACATAATTTTGGATGAGAATCAGCTGGAGGATGCGTGTGAACATCTATCTGAATATCTGGAGGCTTATTGGCGCGCAACACACACTTCCCTTAGCACTCCACTAAACCCTCTGCTGGGCCGCAATCTGGGCTCCACTGCACTCTCACCGTACCCCACAGCCATCTCTGGACTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000009738-'11-12,'11-11,12-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.323
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=FE(27.6=100)
A:
PF0062516=Guanylate_kin=FE(17.1=100)
C2:
PF0062516=Guanylate_kin=PD(13.8=40.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCTGCCCAGCTCATCAAG
R:
TAAGGGAAGTGTGTGTTGCGC
Band lengths:
172-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]