BtaEX6020989 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021808 | CACNB3
Description
Bos taurus calcium channel, voltage-dependent, beta 3 subunit (CACNB3), mRNA. [Source:RefSeq mRNA;Acc:NM_174509]
Coordinates
chr5:31118774-31119476:-
Coord C1 exon
chr5:31119325-31119476
Coord A exon
chr5:31119022-31119117
Coord C2 exon
chr5:31118774-31118923
Length
96 bp
Sequences
Splice sites
3' ss Seq
GCTCTGCCCTTGCCCCTCAGGTA
3' ss Score
10.14
5' ss Seq
CCCGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
CTGAAGTACAGAGTGAGATTGAGCGCATATTCGAGCTGGCCAAATCCCTGCAGCTAGTAGTGTTGGATGCCGACACCATCAACCACCCGGCACAGCTGGCCAAGACCTCGCTGGCCCCCATCATCGTCTTTGTCAAAGTGTCCTCACCGAAG
Seq A exon
GTACTCCAGCGTCTCATCCGCTCCCGGGGGAAGTCGCAGATGAAGCACCTGACCGTACAGATGATGGCATACGATAAGCTGGTTCAGTGCCCACCC
Seq C2 exon
GAGTCATTTGATGTGATTCTGGATGAAAACCAGCTGGAAGATGCCTGCGAGCACCTGGCTGAGTACCTGGAGGTTTACTGGAGGGCGACCCACCACCCAGCCCCCGGCCCTGGGCTTCTGGGCCCTCCCAGTGCCATCCCCGGACTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021808-'16-21,'16-20,17-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.360
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=FE(27.6=100)
A:
PF0062516=Guanylate_kin=FE(17.1=100)
C2:
PF0062516=Guanylate_kin=PD(13.8=50.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAGCGCATATTCGAGCTGG
R:
CAGGCATCTTCCAGCTGGTTT
Band lengths:
181-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]