RnoEX0016184 @ rn6
Exon Skipping
Gene
ENSRNOG00000054274 | Cacnb3
Description
calcium voltage-gated channel auxiliary subunit beta 3 [Source:RGD Symbol;Acc:2248]
Coordinates
chr7:140322285-140323013:+
Coord C1 exon
chr7:140322285-140322436
Coord A exon
chr7:140322668-140322763
Coord C2 exon
chr7:140322864-140323013
Length
96 bp
Sequences
Splice sites
3' ss Seq
TCCCTGCCCTTCTCCTCCAGGTA
3' ss Score
13.18
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
Exon sequences
Seq C1 exon
CTGAGGTGCAGAGTGAGATTGAGCGCATATTCGAGCTGGCCAAATCCCTGCAGCTAGTGGTGTTGGATGCTGACACCATCAACCACCCAGCACAGCTAGCCAAGACCTCACTGGCCCCCATCATCGTCTTCGTCAAAGTGTCCTCGCCAAAG
Seq A exon
GTACTGCAGCGACTGATCCGCTCCAGGGGGAAGTCCCAGATGAAGCACCTCACTGTACAGATGATGGCATATGATAAGCTGGTTCAGTGCCCACCT
Seq C2 exon
GAGTCATTTGATGTGATTCTGGATGAGAACCAGCTGGACGACGCCTGTGAGCACCTAGCTGAATACCTAGAGGTTTACTGGCGCGCTACCCACCACCCAGCACCGGGCCCCGGGATGCTGGGTCCGCCCAGTGCCATCCCTGGACTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000054274-'20-30,'20-29,21-30
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.360
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=FE(27.6=100)
A:
PF0062516=Guanylate_kin=FE(17.1=100)
C2:
PF0062516=Guanylate_kin=PD(13.8=50.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAGCGCATATTCGAGCTGG
R:
GTCGTCCAGCTGGTTCTCATC
Band lengths:
176-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]