MmuEX6056254 @ mm10
Exon Skipping
Gene
ENSMUSG00000003352 | Cacnb3
Description
calcium channel, voltage-dependent, beta 3 subunit [Source:MGI Symbol;Acc:MGI:103307]
Coordinates
chr15:98641939-98642651:+
Coord C1 exon
chr15:98641939-98642090
Coord A exon
chr15:98642309-98642376
Coord C2 exon
chr15:98642502-98642651
Length
68 bp
Sequences
Splice sites
3' ss Seq
CTCTGCCCTTCCCCCGTCAGGTA
3' ss Score
11.62
5' ss Seq
GGCGTACGA
5' ss Score
1.52
Exon sequences
Seq C1 exon
CTGAAGTGCAGAGTGAGATTGAGCGCATATTCGAGCTGGCCAAATCCCTGCAGCTAGTGGTGTTGGATGCTGACACCATCAACCACCCAGCACAACTTGCCAAGACCTCACTGGCTCCCATCATCGTCTTTGTCAAAGTGTCCTCGCCAAAG
Seq A exon
GTACTGCAGCGACTGATCCGCTCCAGGGGAAAGTCACAGATGAAGCACCTCACTGTACAGATGATGGC
Seq C2 exon
GAGTCATTCGACGTGATTCTGGATGAGAACCAGCTAGAAGATGCCTGTGAGCACCTGGCTGAATACTTAGAGGTTTACTGGCGAGCGACCCACCACCCAGCACCGGGCCCCGGACTGCTGGGTCCGCCTAGTGCCATCCCTGGACTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000003352-'21-34,'21-33,22-34
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.360
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=FE(27.6=100)
A:
PF0062516=Guanylate_kin=FE(17.1=100)
C2:
PF0062516=Guanylate_kin=PD(13.8=50.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCTGACACCATCAACCACC
R:
TCGCTCGCCAGTAAACCTCTA
Band lengths:
174-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types