BtaEX6009771 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002297 | CACNB4
Description
calcium channel, voltage-dependent, beta 4 subunit [Source:HGNC Symbol;Acc:HGNC:1404]
Coordinates
chr2:44430927-44454811:+
Coord C1 exon
chr2:44430927-44431078
Coord A exon
chr2:44433103-44433198
Coord C2 exon
chr2:44454626-44454811
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTCATGTTTTCTTCTATCAGGTT
3' ss Score
9.95
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
CGGAAGTACAAAGTGAAATTGAAAGAATCTTTGAGTTGGCAAGATCTTTGCAACTGGTTGTTCTTGATGCAGACACCATCAATCACCCAGCACAACTTATAAAGACCTCCTTAGCACCAATTATTGTTCATGTAAAAGTCTCATCTCCAAAG
Seq A exon
GTTTTACAGCGGTTGATTAAATCGAGAGGAAAGTCTCAAAGTAAACACTTAAATGTTCAACTGGTAGCAGCTGATAAACTTGCACAGTGCCCCCCT
Seq C2 exon
GAAATGTTCGATGTTATACTAGATGAGAATCAGCTGGAGGATGCATGTGAACACCTGGGAGAGTACCTTGAGGCCTACTGGCGAGCCACCCACACAACCAGTAGCACCCCCATGACCCCCCTGCTTGGAAGGAACCTGGGCTCAACAGCACTCTCGCCATATCCCACAGCAATCTCTGGGTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002297-'20-18,'20-14,21-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.403
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=FE(27.6=100)
A:
PF0062516=Guanylate_kin=FE(17.1=100)
C2:
PF0062516=Guanylate_kin=PD(13.8=40.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCATCAATCACCCAGCACA
R:
CTACTGGTTGTGTGGGTGGC
Band lengths:
183-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]