RnoEX6016871 @ rn6
Exon Skipping
Gene
ENSRNOG00000007666 | Cacnb4
Description
calcium voltage-gated channel auxiliary subunit beta 4 [Source:RGD Symbol;Acc:68385]
Coordinates
chr3:37959637-37974195:-
Coord C1 exon
chr3:37974044-37974195
Coord A exon
chr3:37972155-37972250
Coord C2 exon
chr3:37959637-37959822
Length
96 bp
Sequences
Splice sites
3' ss Seq
GGTTCCTGTCATCTTGTCAGGTT
3' ss Score
7.26
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
CGGAAGTACAGAGTGAAATTGAAAGAATTTTCGAGTTGGCAAGATCTTTGCAATTGGTTGTTCTCGATGCAGACACCATCAATCACCCAGCACAGCTGATAAAGACATCGTTAGCGCCCATCATCGTCCACGTGAAGGTCTCGTCCCCAAAG
Seq A exon
GTTTTACAGCGGCTGATTAAGTCCAGAGGAAAGTCCCAGAGTAAACACTTGAATGTTCAACTGGTGGCAGCTGATAAACTGGCCCAGTGTCCCCCT
Seq C2 exon
GAAATGTTTGATGTTATATTAGATGAGAATCAACTTGAGGATGCCTGTGAACATCTGGGAGAGTACCTGGAGGCATATTGGCGTGCCACCCACACAAGCAGTAGCACCCCTATGACCCCATTGCTGGGGAGGAACGTGGGCTCCACAGCTCTCTCACCGTATCCCACAGCAATCTCTGGACTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007666-'17-16,'17-14,18-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.435
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=FE(27.6=100)
A:
PF0062516=Guanylate_kin=FE(17.1=100)
C2:
PF0062516=Guanylate_kin=PD(13.8=40.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCGTTAGCGCCCATCATC
R:
ATGGGGTCATAGGGGTGCTAC
Band lengths:
169-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]