DreEX6080071 @ danRer10
Exon Skipping
Gene
ENSDARG00000037517 | slc35c2
Description
solute carrier family 35 (GDP-fucose transporter), member C2 [Source:ZFIN;Acc:ZDB-GENE-030131-2202]
Coordinates
chr23:20512872-20514957:+
Coord C1 exon
chr23:20512872-20512955
Coord A exon
chr23:20513815-20513990
Coord C2 exon
chr23:20514828-20514957
Length
176 bp
Sequences
Splice sites
3' ss Seq
GTTTTGTTATTCCTGCACAGGAC
3' ss Score
8.32
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GTCTTCAGAACCCCATAGACACCATGTACCATCTGCAGCCCCTCATGTTCCTTGGCCTATTTCCCTTGTTTCTTCTTAATGAGG
Seq A exon
GACTGAGTGTGAGCACCACAGAGAAGCTGTTCAGGGTCAGTGAGCTCTCTCACCTGCTGTACTCTTTAGTCACTCTGTCTGTGGGTGGCATGCTGGCGTTCGGGCTCGGCTTCTCTGAGTTCCTGCTGGTGTCACGCACGTCCAGTCTTACACTGTCCATTGCAGGCATTTTTAAG
Seq C2 exon
GAGGTGTGCACTCTGCTGCTGGCAGTGGAGTTCTTGGGGGATAAAATGAGCACAGTCAACTGGCTTGGTTTTGCTGTGTGCCTGTCTGGGATATCACTTCATATTGGCCTAAAAACATACCGTAACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000037517-'11-14,'11-13,12-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF065706=DUF1129=FE(28.3=100),PF0315111=TPT=FE(18.5=100)
A:
PF065706=DUF1129=PD(13.1=22.0),PF0315111=TPT=FE(38.4=100)
C2:
PF0315111=TPT=PD(23.2=79.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCAGAACCCCATAGACACCA
R:
TGTTACGGTATGTTTTTAGGCCA
Band lengths:
210-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]