GgaEX0026288 @ galGal4
Exon Skipping
Gene
ENSGALG00000020939 | SLC35C2
Description
solute carrier family 35 member C2 [Source:RefSeq peptide;Acc:NP_001026036]
Coordinates
chr20:11072400-11074151:-
Coord C1 exon
chr20:11074068-11074151
Coord A exon
chr20:11073570-11073745
Coord C2 exon
chr20:11072400-11072529
Length
176 bp
Sequences
Splice sites
3' ss Seq
ACTCACTTTCTTGTTCCTAGGCC
3' ss Score
9.51
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GGCTCCAGAACCCCATTGATATCATGTTTCACCTGCAGCCACTCATGTTCCTGGTGCTCTTCCCTCTGTTTGCAGTGTTTGAGG
Seq A exon
GCCTGCCTTTGTCCGTATCAGAGAGGCTCTTCCACTTCCATGAAGCAGGAGTGATGTTCTGTATGGTAGGAAAGCTGTTGTTGGGTGGAATTCTTGCCTTTGGTCTAGGCTTTTCTGAGTTCCTCTTGGTTTCCAGAACATCTAGCCTCACCCTTTCTATTGCTGGTATTTTTAAG
Seq C2 exon
GAAATCTGTGTTTTATTTCTTGCCACACACCTGCTGGGAGACCGCCTCAGTCCCTTAAACTGGCTTGGCTTTGCTGTCTGTCTGTCAGGAATCTCCCTTCATGTCATTCTCAAAGCTGTAAATTCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000020939-'11-13,'11-10,15-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0315111=TPT=FE(18.5=100)
A:
PF0315111=TPT=FE(38.4=100)
C2:
PF0315111=TPT=PD(23.2=79.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTCCAGAACCCCATTGATA
R:
TGGAATTTACAGCTTTGAGAATGACA
Band lengths:
211-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]