RnoEX6020288 @ rn6
Exon Skipping
Gene
ENSRNOG00000018649 | Slc35c2
Description
solute carrier family 35 member C2 [Source:RGD Symbol;Acc:1311250]
Coordinates
chr3:161802063-161805510:-
Coord C1 exon
chr3:161805427-161805510
Coord A exon
chr3:161802896-161803071
Coord C2 exon
chr3:161802063-161802192
Length
176 bp
Sequences
Splice sites
3' ss Seq
GTTCTCCCTTTTGCTTTCAGGTC
3' ss Score
12.19
5' ss Seq
AAGGTACAC
5' ss Score
7.56
Exon sequences
Seq C1 exon
GTCTCCAGAATCCCATTGACACCATGTTCCACCTGCAGCCACTCATGTTTCTGGGGCTCTTCCCTCTCTTTGCCGTATTCGAAG
Seq A exon
GTCTCCATTTGTCCACCTCTGAGAAGATCTTCCGCTTCCAGGACCCGGGCCTGCTCCTGTGGGTTCTGGGGAGCCTCCTCCTCGGAGGGATTCTGGCCTTTGGCTTGGGCTTCTCTGAGTTCCTCTTGGTCTCCAGAACCTCGAGCCTCACACTCTCCATTGCTGGCATTTTTAAG
Seq C2 exon
GAAGTCTGCACCCTGCTATTGGCAGCTCACCTGCTGGGTGACCAGATCAGCCTTCTGAACTGGCTGGGCTTCGCCCTCTGCCTCTCTGGCATCTCCCTTCACGTGGCCCTCAAGGCCCTACATTCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018649-'16-32,'16-30,18-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0315111=TPT=FE(18.5=100)
A:
PF0315111=TPT=FE(38.4=100)
C2:
PF0315111=TPT=PD(23.2=79.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTCCAGAATCCCATTGACACC
R:
TGGAATGTAGGGCCTTGAGGG
Band lengths:
211-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]