MmuEX6106988 @ mm9
Exon Skipping
Gene
ENSMUSG00000017664 | Slc35c2
Description
solute carrier family 35, member C2 [Source:MGI Symbol;Acc:MGI:2385166]
Coordinates
chr2:165102952-165106200:-
Coord C1 exon
chr2:165106117-165106200
Coord A exon
chr2:165103741-165103916
Coord C2 exon
chr2:165102952-165103081
Length
176 bp
Sequences
Splice sites
3' ss Seq
TCTCCCCTTGCTGCTTTCAGGTC
3' ss Score
11.44
5' ss Seq
AAGGTACAC
5' ss Score
7.56
Exon sequences
Seq C1 exon
GCCTCCAGAATCCCATTGACACCATGTTCCACCTGCAGCCACTCATGTTTCTGGGCCTCTTCCCTCTCTTTGCCATATTCGAAG
Seq A exon
GTCTCCACTTGTCCACCTCTGAGAAGATCTTCCGCTTCCAGGACACAGGGCTGCTCCTGTGGGTGCTTGGGAGCCTCCTCCTCGGTGGGATTCTGGCCTTCGGTTTGGGCTTCTCCGAGTTCCTCCTGGTCTCCAGAACGTCAAGCCTCACACTCTCCATCGCTGGCATCTTTAAG
Seq C2 exon
GAAGTCTGCACCCTGCTGTTGGCAGCTCACCTGCTGGGCGACCAGATCAGCCTCCTGAACTGGCTGGGCTTTGCCCTCTGCCTCTCTGGCATCTCCCTGCATGTGGCCCTCAAGGCTCTACATTCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000017664-'14-24,'14-22,18-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0315111=TPT=PD(48.2=93.1)
A:
PF0315111=TPT=FE(38.4=100)
C2:
PF0315111=TPT=PD(23.2=79.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCCAGAATCCCATTGACA
R:
TGGAATGTAGAGCCTTGAGGG
Band lengths:
211-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: