DreEX6080175 @ danRer10
Exon Skipping
Gene
ENSDARG00000079199 | megf6a
Description
multiple EGF-like-domains 6a [Source:ZFIN;Acc:ZDB-GENE-090312-12]
Coordinates
chr23:21212008-21212610:-
Coord C1 exon
chr23:21212482-21212610
Coord A exon
chr23:21212236-21212364
Coord C2 exon
chr23:21212008-21212136
Length
129 bp
Sequences
Splice sites
3' ss Seq
ATCTTCTGTTGTGTGTTCAGAAT
3' ss Score
8.64
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
AGTGCTCAGCTGGATTGTATGGTGTGGGCTGCAACCAGCATTGCCTGTGTCAGAATGGAGGGTCGTGTGACCGAATCAGTGGCCACTGCACATGTGTCAGTGGGTGGACAGGAGTGGCCTGTGAATTGG
Seq A exon
AATGTGCTGCGGGACACTTTGGCATGGACTGTCAGCACAAGTGTGAGTGTGTAAATGGCGGCGTGTGTGACCGTCACAGTGGCAGGTGTTTGTGCCCAGCAGGTTGGACAGGCACGCACTGTGAGACAG
Seq C2 exon
CATGCACTCAAGGTTTTTATGGTCCGGGCTGTAAGGAGCGATGCCGGTGTGATCATAACGCCGCATGCCACCACATCACTGGCACCTGCTTGTGTCCCGCTGGCTGGAGAGGGACTCACTGCGAAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079199-'27-23,'27-22,28-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF126612=hEGF=WD(100=29.5)
C2:
PF0005319=Laminin_EGF=PU(63.0=65.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTGTATGGTGTGGGCTGCA
R:
CCTTTTCGCAGTGAGTCCCTC
Band lengths:
246-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]