DreEX6081087 @ danRer10
Exon Skipping
Gene
ENSDARG00000005350 | dip2ba
Description
DIP2 disco-interacting protein 2 homolog Ba (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-040426-2305]
Coordinates
chr23:27454460-27456846:-
Coord C1 exon
chr23:27456737-27456846
Coord A exon
chr23:27456546-27456648
Coord C2 exon
chr23:27454460-27454524
Length
103 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGTGTGTGTTTTCAGTAT
3' ss Score
9.37
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GATGGCCTCGTCTCAAGTGGGTGGTCACTGATACCAAGTATCTCACCAAACCATCCAAGGACTGGCAGCCGCACATACCTACTGCAAACACTGACACCGCTTACATAGAG
Seq A exon
TATAAGGCCTCTAAGGAGGGTACGGTGATGGGAGTGGCTGTGTCGAAAATCTCCATGCTGACACACTGCCAGGCTCTAACTCAGGCCTGTAATTACTGTGAAG
Seq C2 exon
GAGAAACACTGGTTAATGTCCTGGATTTCAAAAAGGACTCTGGGCTTTGGCATGGAGTTCTAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005350-'20-16,'20-15,21-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(7.5=100)
A:
PF0050123=AMP-binding=FE(7.1=100)
C2:
PF0050123=AMP-binding=FE(4.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGCCTCGTCTCAAGTGG
R:
TAGAACTCCATGCCAAAGCCC
Band lengths:
172-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]