HsaEX0019753 @ hg19
Exon Skipping
Gene
ENSG00000066084 | DIP2B
Description
DIP2 disco-interacting protein 2 homolog B (Drosophila) [Source:HGNC Symbol;Acc:29284]
Coordinates
chr12:51080356-51089143:+
Coord C1 exon
chr12:51080356-51080465
Coord A exon
chr12:51084832-51084934
Coord C2 exon
chr12:51089050-51089143
Length
103 bp
Sequences
Splice sites
3' ss Seq
TTTCTGTTTTTGTTTTCTAGTAT
3' ss Score
10.13
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
Exon sequences
Seq C1 exon
GTTGGCCCCGGCTCAAATGGGTTGTAACAGATTCCAAGTACCTTTCAAAGCCACCGAAAGACTGGCAGCCACACATCTCACCTGCTGGGACAGAACCGGCATACATTGAG
Seq A exon
TATAAAACAAGCAAAGAAGGGAGTGTAATGGGAGTTACAGTATCCCGGCTTGCAATGTTGTCTCACTGCCAAGCTCTGTCGCAGGCCTGCAATTATTCTGAAG
Seq C2 exon
AATGTAATGAATAAGATGCACACAATCAGCGTACCCTACTCTGTTATGAAAACCTGTCCTCTCTCTTGGGTCCAAAGAGTACATGCTCACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000066084_MULTIEX2-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(7.6=100)
A:
PF0050123=AMP-binding=FE(7.2=100)
C2:
PF0050123=AMP-binding=FE(6.6=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGGCCCCGGCTCAAATG
R:
TTGTGAGCATGTACTCTTTGGACC
Band lengths:
202-305
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)