HsaEX0019753 @ hg38
Exon Skipping
Gene
ENSG00000066084 | DIP2B
Description
disco interacting protein 2 homolog B [Source:HGNC Symbol;Acc:HGNC:29284]
Coordinates
chr12:50686573-50695360:+
Coord C1 exon
chr12:50686573-50686682
Coord A exon
chr12:50691049-50691151
Coord C2 exon
chr12:50695267-50695360
Length
103 bp
Sequences
Splice sites
3' ss Seq
TTTCTGTTTTTGTTTTCTAGTAT
3' ss Score
10.13
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
Exon sequences
Seq C1 exon
GTTGGCCCCGGCTCAAATGGGTTGTAACAGATTCCAAGTACCTTTCAAAGCCACCGAAAGACTGGCAGCCACACATCTCACCTGCTGGGACAGAACCGGCATACATTGAG
Seq A exon
TATAAAACAAGCAAAGAAGGGAGTGTAATGGGAGTTACAGTATCCCGGCTTGCAATGTTGTCTCACTGCCAAGCTCTGTCGCAGGCCTGCAATTATTCTGAAG
Seq C2 exon
AATGTAATGAATAAGATGCACACAATCAGCGTACCCTACTCTGTTATGAAAACCTGTCCTCTCTCTTGGGTCCAAAGAGTACATGCTCACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000066084_MULTIEX3-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(16.8=100)
A:
PF0050123=AMP-binding=FE(15.9=100)
C2:
PF0050123=AMP-binding=FE(6.6=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGGCCCCGGCTCAAATG
R:
TTGTGAGCATGTACTCTTTGGACC
Band lengths:
202-305
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development