HsaEX0019754 @ hg38
Exon Skipping
Gene
ENSG00000066084 | DIP2B
Description
disco interacting protein 2 homolog B [Source:HGNC Symbol;Acc:HGNC:29284]
Coordinates
chr12:50686573-50695360:+
Coord C1 exon
chr12:50686573-50686682
Coord A exon
chr12:50692949-50693013
Coord C2 exon
chr12:50695267-50695360
Length
65 bp
Sequences
Splice sites
3' ss Seq
TCCTATTTTTTCTATTTTAGGGG
3' ss Score
12.24
5' ss Seq
GCGGTAAGC
5' ss Score
8.99
Exon sequences
Seq C1 exon
GTTGGCCCCGGCTCAAATGGGTTGTAACAGATTCCAAGTACCTTTCAAAGCCACCGAAAGACTGGCAGCCACACATCTCACCTGCTGGGACAGAACCGGCATACATTGAG
Seq A exon
GGGAAACAATAGTAAATGTCTTAGACTTTAAGAAGGATGCTGGGCTGTGGCACGGCATGTTTGCG
Seq C2 exon
AATGTAATGAATAAGATGCACACAATCAGCGTACCCTACTCTGTTATGAAAACCTGTCCTCTCTCTTGGGTCCAAAGAGTACATGCTCACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000066084_MULTIEX3-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=0.035 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(16.8=100)
A:
PF0050123=AMP-binding=FE(4.4=100)
C2:
PF0050123=AMP-binding=FE(6.6=100)
Main Skipping Isoform:
ENST00000301180fB13807
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGGCTCAAATGGGTTGTAA
R:
GGACCCAAGAGAGAGGACAGG
Band lengths:
177-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development