GgaEX7011876 @ galGal4
Exon Skipping
Gene
ENSGALG00000006139 | DIP2B
Description
disco-interacting protein 2 homolog B [Source:HGNC Symbol;Acc:HGNC:29284]
Coordinates
chrLGE22C19W28_E50C23:170031-170961:-
Coord C1 exon
chrLGE22C19W28_E50C23:170859-170961
Coord A exon
chrLGE22C19W28_E50C23:170254-170318
Coord C2 exon
chrLGE22C19W28_E50C23:170031-170124
Length
65 bp
Sequences
Splice sites
3' ss Seq
CTACAACTTTCTCTTTCCAGGTG
3' ss Score
11.25
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
TACAAGACCAGCAAAGAGGGCAGTGTTATGGGTGTCACAGTGTCTCGGATTGCAATGCTGTCTCACTGCCAAGCTTTGTCTCAGGCTTGCAACTATTCTGAAG
Seq A exon
GTGAAACAATAGTGAATGTTTTGGATTTTAAGAAGGATGCAGGGTTGTGGCACGGCATTCTCACG
Seq C2 exon
AATGTAATGAACAAATTGCATACTATCAGCGTGCCCTATTCTGTGATGAAAACCTGCCCACTGTCATGGGTGCAGAGAGTTCATACTCACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006139-'29-24,'29-23,30-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(11.1=100)
A:
PF0050123=AMP-binding=FE(4.4=100)
C2:
PF0050123=AMP-binding=FE(10.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGGCAGTGTTATGGGTGT
R:
ACTCTCTGCACCCATGACAGT
Band lengths:
169-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]