RnoEX6034078 @ rn6
Exon Skipping
Gene
ENSRNOG00000056106 | Dip2b
Description
disco-interacting protein 2 homolog B [Source:RGD Symbol;Acc:1305671]
Coordinates
chr7:141832699-141836402:+
Coord C1 exon
chr7:141832699-141832801
Coord A exon
chr7:141834543-141834607
Coord C2 exon
chr7:141836309-141836402
Length
65 bp
Sequences
Splice sites
3' ss Seq
CTCCATCTTTTCTCTTGCAGGAG
3' ss Score
11.72
5' ss Seq
GCGGTAAGC
5' ss Score
8.99
Exon sequences
Seq C1 exon
TATAAAACAAGCAAAGAGGGGAGTGTGATGGGAGTCACAGTGTCCCGGCTTGCAATGCTGTCCCACTGCCAAGCTCTGTCACAGGCCTGCAGTTATTCTGAAG
Seq A exon
GAGAAACTGTCGTAAATGTCTTAGACTTTAAGAAGGATGCTGGGCTGTGGCATGGCATGTTTGCG
Seq C2 exon
AATGTAATGAATAAGATGCATACAATTAGTGTGCCCTACTCTGTTATGAAGACCTGTCCTCTCTCTTGGGTCCAGAGAGTCCACGCTCACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056106-'23-26,'23-25,24-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(7.1=100)
A:
PF0050123=AMP-binding=FE(4.4=100)
C2:
PF0050123=AMP-binding=FE(6.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAAGAGGGGAGTGTGATGG
R:
GTGGACTCTCTGGACCCAAGA
Band lengths:
177-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]