MmuEX6056490 @ mm10
Exon Skipping
Gene
ENSMUSG00000023026 | Dip2b
Description
disco interacting protein 2 homolog B [Source:MGI Symbol;Acc:MGI:2145977]
Coordinates
chr15:100167856-100171213:+
Coord C1 exon
chr15:100167856-100167958
Coord A exon
chr15:100169267-100169331
Coord C2 exon
chr15:100171120-100171213
Length
65 bp
Sequences
Splice sites
3' ss Seq
CTCCATCTTTTCTCTTGCAGGAG
3' ss Score
11.72
5' ss Seq
GCGGTAAGC
5' ss Score
8.99
Exon sequences
Seq C1 exon
TATAAAACAAGCAAAGAAGGGAGTGTGATGGGAGTCACGGTGTCGCGGCTCGCAATGCTGTCTCAGTGCCAAGCTCTGTCACAGGCCTGCAATTATTCTGAAG
Seq A exon
GAGAAACTGTAGTAAATGTTTTAGACTTTAAGAAGGACGCTGGGCTGTGGCATGGCATGTTTGCG
Seq C2 exon
AATGTAATGAATAAGATGCATACAATTAGTGTACCCTACTCTGTTATGAAGACCTGTCCTCTCTCTTGGGTCCAGAGAGTCCATGCTCACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023026-'35-25,'35-24,36-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(7.1=100)
A:
PF0050123=AMP-binding=FE(4.4=100)
C2:
PF0050123=AMP-binding=FE(6.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGAGTGTGATGGGAGTCAC
R:
TGAGCATGGACTCTCTGGACC
Band lengths:
175-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types