MmuEX6056491 @ mm10
Exon Skipping
Gene
ENSMUSG00000023026 | Dip2b
Description
disco interacting protein 2 homolog B [Source:MGI Symbol;Acc:MGI:2145977]
Coordinates
chr15:100162679-100169331:+
Coord C1 exon
chr15:100162679-100162788
Coord A exon
chr15:100167856-100167958
Coord C2 exon
chr15:100169267-100169331
Length
103 bp
Sequences
Splice sites
3' ss Seq
TTTTTATTTTATTTTTCTAGTAT
3' ss Score
8.63
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
Exon sequences
Seq C1 exon
GTTGGCCTCGCCTCAAGTGGGTTGTGACAGATTCTAAGTACCTCTCGAAGCCGCCCAAAGACTGGCAGCCACACATATCACCTGCGGGCACGGAACCGGCATACATTGAG
Seq A exon
TATAAAACAAGCAAAGAAGGGAGTGTGATGGGAGTCACGGTGTCGCGGCTCGCAATGCTGTCTCAGTGCCAAGCTCTGTCACAGGCCTGCAATTATTCTGAAG
Seq C2 exon
GAGAAACTGTAGTAAATGTTTTAGACTTTAAGAAGGACGCTGGGCTGTGGCATGGCATGTTTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023026-'34-24,'34-23,35-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(7.6=100)
A:
PF0050123=AMP-binding=FE(7.1=100)
C2:
PF0050123=AMP-binding=FE(4.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCGCCTCAAGTGGGTTG
R:
CGCAAACATGCCATGCCAC
Band lengths:
170-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types