DreEX6082809 @ danRer10
Exon Skipping
Gene
ENSDARG00000036913 | st6galnac6
Description
ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 [Source:ZFIN;Acc:ZDB-GENE-060322-7]
Coordinates
chr21:3671134-3675171:-
Coord C1 exon
chr21:3675110-3675171
Coord A exon
chr21:3673505-3673711
Coord C2 exon
chr21:3671134-3671542
Length
207 bp
Sequences
Splice sites
3' ss Seq
GTTTGTGTGTGTGTTTTGAGCAA
3' ss Score
0.34
5' ss Seq
AAGGTGACC
5' ss Score
6.78
Exon sequences
Seq C1 exon
GCATGAGAACTGAAACCTGATAGAAGGGTGGCAGGAGAATGACACTGCAGCTCGTAGATAAA
Seq A exon
CAATGGCAGCAGGGGCAGCGGATGGTGATTTACGGAGCGGTTTTCCTCATCACGACGCTCCTCATCCTCTACAGCTCCAGCAGCTCAGCTGATCTTTCCAGATCCTTCAAGACAAGCAACTTCCGTCAAATCCACCACACGCTCAAAACCACCAACCTCAAGAAATGGGCTGGAAAAGACGGATACCTTCCTGTTTACGGCAACAAG
Seq C2 exon
AGCCTGAACCTGCACTGCCATCACTCGCATTAGTGACCAGCTCCAGTCACGTGTTGGGCTCTCAGGCAGGCGAGGAGATCGACAGAACGCAGTGTGTTTTCCGCATGAACAATGCTCCCACCTCCGGACACCAGTCAGATGTGGGCAACCGGACCACTGTTCGCGTCGTGGCTCACTCCAGCGTCTTCAGCGTGGTCCGCAAGCCGGCAGAGTTTCTCAACCGCTCTGAAAACCCCATCATCATTTTCTGGGGCCCGTCCTCCAAGATCAGCCGGGAAGCAAAGGGAACGCTGTACCACCTCATCCAGAGAGTCAGCATGACCTACAGAAACCTGTCCTTCTTCTTCATCTCACCCAGCAAAATGCAGAAGTTTGATGCGCTTTTCCAGAAGGAGACCGGCAGAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000036913-'2-7,'2-3,4-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.060 C2=0.128
Domain overlap (PFAM):
C1:
NO
A:
PF0077713=Glyco_transf_29=PU(17.5=71.0)
C2:
PF0077713=Glyco_transf_29=FE(45.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGATAGAAGGGTGGCAGGA
R:
CGGGCCCCAGAAAATGATGAT
Band lengths:
304-511
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]