GgaEX1055720 @ galGal4
Exon Skipping
Gene
ENSGALG00000005298 | ST6GALNAC6
Description
ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 [Source:HGNC Symbol;Acc:HGNC:23364]
Coordinates
chr17:4872870-4874069:+
Coord C1 exon
chr17:4872870-4872934
Coord A exon
chr17:4873335-4873514
Coord C2 exon
chr17:4873672-4874069
Length
180 bp
Sequences
Splice sites
3' ss Seq
CACTGTCCCCCCACCCGCAGAGC
3' ss Score
10.79
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
Exon sequences
Seq C1 exon
GTGCTCGCAGGACGTCGGCGATCAGTTGGCACTGAGGGCAGCGTGGAGACATGAGCGGCAGCACG
Seq A exon
AGCCAGCGCGCCGCCGTCTTCGTGCTTCTCTTCGCCCTGCTCATGCTGCTGATCATCTACAGCTCCAGCAGTGGCACCGAGGTGTTCCCCTACAGTGCACTGCGGGGCAGAGCCCGGCGGCCCCCCAACCTGCGGCACTGGGGGGTGAGCAGCGGGTACCTGCCTGTCTCCGGGAACAAG
Seq C2 exon
AGCCTGACTGCCCACTGCCACCAATGCGCCATCGTCACCAGCTCCAGCCACCTCCTGGGCACCCACCTGGGTGCTGAGATCGACCAAGCCGAGTGCACCATCCGCATGAACGACGCTCCCACCACCGGCTACGAGGCCGATGTGGGCAACAAGACCACCTTCCGCGTGGTGGCCCACTCCAGCATCTACCGCGTCCTCAAGAGGCCCCAAGAGTTCGTCAATAAGACCCCGGAGACCGTCCTCATCTTCTGGGGGCCGCCGGCCAAGATGCAGAAGGGGCTGTTGAAGATCATCCAACGCGTCGGCGCATCCTTCCCCAACATGACGGCCTACGTCGTCTCCCCGCACCGCATGAAGCAGTTTGATGAGCTCTTTCGGGGGGAGACGGGGAAGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005298-'3-8,'3-5,6-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.053
Domain overlap (PFAM):
C1:
NO
A:
PF0077713=Glyco_transf_29=PU(9.8=40.0)
C2:
PF0077713=Glyco_transf_29=FE(54.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAGACATGAGCGGCAG
R:
TCTCCGGGGTCTTATTGACGA
Band lengths:
258-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]