RnoEX0086482 @ rn6
Exon Skipping
Gene
ENSRNOG00000046984 | St6galnac6
Description
ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 [Source:RGD Symbol;Acc:1303196]
Coordinates
chr3:11630777-11636267:+
Coord C1 exon
chr3:11630777-11630867
Coord A exon
chr3:11633722-11633901
Coord C2 exon
chr3:11635861-11636267
Length
180 bp
Sequences
Splice sites
3' ss Seq
ATGGCCTCTTCCCTCCCCAGGAG
3' ss Score
10.78
5' ss Seq
AAGGTAGAG
5' ss Score
6.38
Exon sequences
Seq C1 exon
GTGTGACCCCACAACCTTGCCCCCCGGGCCACCTGCAGGACGCTGGCCTCTACCCTTCAGCAGACGCCGCCGAGAGATGAGTAGCAACAAA
Seq A exon
GAGCAGCGGTCAGCAGTGTTTGTGGTCCTCTTTGCTCTCATCACCATCCTCATCCTCTACAGCTCCAACAGTGCCAACGAGGTCTTCCACTACGGCTCCCTGCGGGGCCGCTCGCGGCGGCCAGTCAACCTCAAGAAGTGGAGTTTCTCCAACGCCTACTTCCCTATCCTCGGCAACAAG
Seq C2 exon
ACGCTGCCGTCCCGGTGCAACCAGTGTGTGATCGTCACCAGCTCCAGCCACCTGCTGGGCACCAAACTGGGCCCTGAGATTGAGCGGGCCGAGTGCACCATCCGCATGAACGATGCTCCCACCACTGGCTACTCGGCCGACGTCGGCAACAAAACCACCTTCCGCGTAGTGGCTCATTCCAGTGTGTTCCGGGTGCTGCGGAAGCCCCAGGAATTTGTCAACAGGACCCCTGAAACTGTGTTCATCTTCTGGGGCCCCCCAAACAAGATGCAGAAGCCCCAGGGCAGCCTCCTGCGCGTCATCCAGCGGGCGGGCCTTGCGTTCCCTAACATGGAGGCCTATGCCGTCTCTCAAGCCCGCATGCAGCAGTTTGACGACCTCTTCCGGGGTGAGACAGGCAAGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046984-'6-7,'6-3,9-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.600 A=0.000 C2=0.051
Domain overlap (PFAM):
C1:
NO
A:
PF0077713=Glyco_transf_29=PU(16.1=73.3)
C2:
PF0077713=Glyco_transf_29=FE(49.3=100)
Main Skipping Isoform:
ENSRNOT00000074401fB14416
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCGAGAGATGAGTAGCAAC
R:
TGACAAATTCCTGGGGCTTCC
Band lengths:
244-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]