GgaEX0007320 @ galGal3
Exon Skipping
Gene
ENSGALG00000005298 | ST6GALNAC6
Description
NA
Coordinates
chrUn_random:7558719-7559955:-
Coord C1 exon
chrUn_random:7559855-7559955
Coord A exon
chrUn_random:7559275-7559454
Coord C2 exon
chrUn_random:7558719-7559117
Length
180 bp
Sequences
Splice sites
3' ss Seq
CACTGTCCCCCCACCCGCAGAGC
3' ss Score
10.79
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
Exon sequences
Seq C1 exon
ATCCCACTGCTTTTGGGGTGACTGCGTGCCTCGCAGGTGCTCGCAGGACGTCGGCGATCAGTTGGCACTGAGGGCAGCGTGGAGACATGAGCGGCAGCACG
Seq A exon
AGCCAGCGCGCCGCCGTCTTCGTGCTTCTCTTCGCCCTGCTCATGCTGCTGATCATCTACAGCTCCAGCAGTGGCACCGAGGTGTTCCCCTACAGTGCACTGCGGGGCAGAGCCCGGCGGCCCCCCAACCTGCGGCACTGGGGGGTGAGCAGCGGGTACCTGCCTGTCTCCGGGAACAAG
Seq C2 exon
AGCCTGACTGCCCACTGCCACCAATGCGCCATCGTCACCAGCTCCAGCCACCTCCTGGGCACCCACCTGGGTGCTGAGATCGACCAAGCCGAGTGCACCATCCGCATGAACGACGCTCCCACCACCGGCTACGAGGCCGATGTGGGCAACAAGACCACCTTCCGCGTGGTGGCCCACTCCAGCATCTACCGCGTCCTCAAGAGGCCCCAAGAGTTCGTCAATAAGACCCCGGAGACCGTCCTCATCTTCTGGGGGCCGCCGGCCAAGATGCAGAAGGGGCTGTTGAAGATCATCCAACGCGTCGGCGCATCCTTCCCCAACATGACGGCCTACGTCGTCTCCCCGCACCGCATGAAGCAGTTTGATGAGCTCTTTCGGGGGGAGACGGGGAAGGACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005298-'0-1,'0-0,2-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.053
Domain overlap (PFAM):
C1:
NA
A:
PF0077713=Glyco_transf_29=PU(16.7=42.6)
C2:
PF0077713=Glyco_transf_29=PD(82.1=96.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACTGCTTTTGGGGTGACTG
R:
GTGGTCTTGTTGCCCACATCG
Band lengths:
256-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]