BtaEX6046314 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000044129 | ST6GALNAC6
Description
Bos taurus ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1, 3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 (ST6GALNAC6), mRNA. [Source:RefSeq mRNA;Acc:NM_001001151]
Coordinates
chr11:98572244-98577402:-
Coord C1 exon
chr11:98577315-98577402
Coord A exon
chr11:98575105-98575284
Coord C2 exon
chr11:98572244-98572650
Length
180 bp
Sequences
Splice sites
3' ss Seq
CTGGCCTCTCCCCTCTCCAGGAG
3' ss Score
10.89
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
Exon sequences
Seq C1 exon
GTGTGACCACACACCCCTACCTGGGCCACCTGCAGGACACTGGCCCCTGCCCCTCAGCAGACGCCGGAGAGAGATGAAGAGCAACAAA
Seq A exon
GAGCAGCGGTCAGCAGTGTTCGTGATCCTCTTTGCCCTCATCACCATCCTCATCCTCTACAGCTCCAGCAGTGCCAATGAGGTCTTTCATTATGGCTCCCTGCGGGGCCGGACACGCCGGCCTGTCAACCTCAGGAAGTGGAGCATCACTGACGGATACATCCCCATTCTTGGCAACAAG
Seq C2 exon
ACGCTGCCCTCCAGGTGCGGCCAGTGTGTGATTGTCACCAGCTCCAGCCACCTGCTGGGCACCAAGCTGGGTCCTGAGATCGAACGGGCCGAGTGCACAATCCGCATGAACGACGCACCCACTACGGGCTACTCGGCCGATGTGGGCAACAAGACCACCTTCCGCGTGGTGGCCCATTCCAGCGTATTCCATGTGCTGCGGAGGCCTCAGGAGTTTGTCAACCGGACCCCTGAAACTGTGTTCATCTTCTGGGGCCCCCCAAACAAGATGCAGAAGCCCCAGGGAAGCCTGGTGCGCGTCATCCAGCGGGCAGGCCTGGTGTTCCCCAACATGGAGGCCTATGCCATCTCCCTCAGCCGCATGCGCCAGTTTGACGACCTCTTCCGGAGTGAGACAGGCAAGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000044129-'9-10,'9-6,13-10=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.722 A=0.000 C2=0.015
Domain overlap (PFAM):
C1:
NO
A:
PF0077713=Glyco_transf_29=PU(14.1=63.3)
C2:
PF0077713=Glyco_transf_29=FE(50.2=100)
Main Skipping Isoform:
ENSBTAT00000061027fB6772
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGCCGGAGAGAGATGAAGA
R:
CCGGTTGACAAACTCCTGAGG
Band lengths:
254-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]