HsaEX0062047 @ hg19
Exon Skipping
Gene
ENSG00000160408 | ST6GALNAC6
Description
ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 [Source:HGNC Symbol;Acc:23364]
Coordinates
chr9:130656791-130658611:-
Coord C1 exon
chr9:130658521-130658611
Coord A exon
chr9:130656910-130656970
Coord C2 exon
chr9:130656791-130656908
Length
61 bp
Sequences
Splice sites
3' ss Seq
CTGACCTCTCCTCTCTCCAGGAG
3' ss Score
11.65
5' ss Seq
ACAGCTCCA
5' ss Score
-26.47
Exon sequences
Seq C1 exon
GTGTGAACCCACATCCCTGCCCCCAGGGCCACCTGCAGGACGCCGACACCTACCCCTCAGCAGACGCCGGAGAGAAATGAGTAGCAACAAA
Seq A exon
GAGCAGCGGTCAGCAGTGTTCGTGATCCTCTTTGCCCTCATCACCATCCTCATCCTCTACA
Seq C2 exon
CTCCAACAGTGCCAATGAGGTCTTCCATTACGGCTCCCTGCGGGGCCGTAGCCGCCGACCTGTCAACCTCAAGAAGTGGAGCATCACTGACGGCTATGTCCCCATTCTCGGCAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160408-'8-16,'8-15,9-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.806 A=0.008 C2=0.008
Domain overlap (PFAM):
C1:
NO
A:
PF0077713=Glyco_transf_29=PU(23.7=70.0),PF155481=DUF4655=PU(0.1=0.0)
C2:
PF0077713=Glyco_transf_29=PU(23.7=70.0),PF155481=DUF4655=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGACGCCGGAGAGAAATGAG
R:
GGACATAGCCGTCAGTGATGC
Band lengths:
132-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)