DreEX6083709 @ danRer10
Exon Skipping
Gene
ENSDARG00000026634 | ehmt1b
Description
euchromatic histone-lysine N-methyltransferase 1b [Source:ZFIN;Acc:ZDB-GENE-080515-3]
Coordinates
chr21:14566635-14567256:-
Coord C1 exon
chr21:14567098-14567256
Coord A exon
chr21:14566892-14566960
Coord C2 exon
chr21:14566635-14566752
Length
69 bp
Sequences
Splice sites
3' ss Seq
GTACATTTTTCATTCACAAGCCC
3' ss Score
0.63
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
CCAAAGGAGATTGTGCGTGTGAATGGAGAGAAAATGGATAATGAGTCTGATGAGGAGGAGTCAGAGGAAGGGGAAGACACAGAGGATGAAGAAGAGCTAGTCACAGAAGATGGAGCCAAAGCTTCACATGAGGAACCTAGGATACCTTCGATCTCACAG
Seq A exon
CCCCTGGAAGAAGAGTCTGAGGAGTCTCAAGACTGTGAAGGTGAAGAGGAAGGGGATGAATCAGACTTG
Seq C2 exon
AGTTCAGAATCCAGTTTGAAAAAGAAATGGAAAAAGAAAGCCAAAGGAGATCATGCCTGGCTCCGACCGTCAAGGAAACGCAAGAGGAAATGGAAAGCAAAAACGGACAAGGTTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000026634-'20-12,'20-11,21-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.900
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAAGGGGAAGACACAGAGG
R:
TCCTCTTGCGTTTCCTTGACG
Band lengths:
183-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]