RnoEX0031254 @ rn6
Exon Skipping
Gene
ENSRNOG00000007242 | Ehmt1
Description
euchromatic histone lysine methyltransferase 1 [Source:RGD Symbol;Acc:1307588]
Coordinates
chr3:2030744-2037677:-
Coord C1 exon
chr3:2037520-2037677
Coord A exon
chr3:2032324-2032401
Coord C2 exon
chr3:2030744-2030864
Length
78 bp
Sequences
Splice sites
3' ss Seq
TTTTTATTTGGCTTGATCAGATG
3' ss Score
6.3
5' ss Seq
CTGGTAACC
5' ss Score
4.51
Exon sequences
Seq C1 exon
CTTGCTTGCCTTTTGTTTTAGCAGCTGCAGTGTCTCGGAAGAAAAAACGAAGAATGGGAACCTATAGCTTAGTTCCCAAGAAAAAGACCAAAGTATTAAAGCAGAGGACGGTGATTGAGATGTTTAAAAGCATCACTCATTCCACTGTGGGTGCCAAG
Seq A exon
ATGGATGGAGATTCAGAGGAGGAACAGGAGTCTCCTGACACAGGGGAGGACGAAGACGGTGGAGATGAGTCTGACCTG
Seq C2 exon
AGTTCTGAATCTAGTATCAAGAAGAAATTTCTCAAGAGAAGAGGGAAGACTGACAGCCCCTGGATCAAACCTGCTCGGAAAAGGAGGCGGAGAAGCAGAAAGAAGCCAAGCAGCATGCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007242_MULTIEX2-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.534 A=1.000 C2=0.878
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGAGGACGGTGATTGAGA
R:
GCATGCTGCTTGGCTTCTTTC
Band lengths:
177-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]