GgaEX0027581 @ galGal4
Exon Skipping
Gene
ENSGALG00000008472 | EHMT1
Description
histone-lysine N-methyltransferase, H3 lysine-9 specific 5 [Source:RefSeq peptide;Acc:NP_001012550]
Coordinates
chr17:2044766-2047880:+
Coord C1 exon
chr17:2044766-2044954
Coord A exon
chr17:2045611-2045691
Coord C2 exon
chr17:2047760-2047880
Length
81 bp
Sequences
Splice sites
3' ss Seq
GGGGCACATGGTGGCTGCAGATT
3' ss Score
1.27
5' ss Seq
TTGGTAAGC
5' ss Score
8.72
Exon sequences
Seq C1 exon
AGTGAAAAGGAGCTAGGTGATGTCAGCCCTCACGTGAATGGGGAGAGCATAGATGTAGACTCTGAAGAGGAAGACTCTGATGAGTTGGAAGATGAGGACGATCACGGAGCAGAACAGGCAGCTGCATTTCCTGCAGACGATAACAGGACCTCTAAAGACAGCGCGTCTGACGCAGACAATGTCAGAAAG
Seq A exon
ATTGATGATGGCGACTCTGAGGAGGAACAAGAGTCTGCAGAATCTGGAGAGGATGAGGAGGATGGAGATGAATCTGACTTG
Seq C2 exon
AGCTCGGAGTCCAGCATCAAGAAGAAGCTGTTGAAGAGGAAAGGAAAGACGGACAGCCCATGGCTGAAACCCACCCGCAAGAGGAGACGGAGGAATAAAAAGAAACAAGCCAATGTGCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008472-'11-14,'11-11,12-14
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.907
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGATCACGGAGCAGAACAG
R:
CTCTTGCGGGTGGGTTTCAG
Band lengths:
176-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]