MmuEX0016467 @ mm9
Exon Skipping
Gene
ENSMUSG00000036893 | Ehmt1
Description
euchromatic histone methyltransferase 1 [Source:MGI Symbol;Acc:MGI:1924933]
Coordinates
chr2:24712126-24718931:-
Coord C1 exon
chr2:24718743-24718931
Coord A exon
chr2:24713693-24713770
Coord C2 exon
chr2:24712126-24712246
Length
78 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTTTGGCTTGATCAGATG
3' ss Score
7.3
5' ss Seq
CTGGTAACC
5' ss Score
4.51
Exon sequences
Seq C1 exon
GGCGAGAAAGCCTTAGATGATAGTGCCCTGCATGTAAATGGCGAGAGCTTGGAGATGGACTCAGAAGATGAAGACTCCGATGAGCTGGAGGATGACGAGGACCATGGAGCTGAGCAAGCGGCTGCATTTCCCACCGAGGATAGTAGGACTTCTAAAGAGAGCATGTCTGAGACTGACCGGGCTGCAAAG
Seq A exon
ATGGATGGAGATTCAGAGGAGGAACAGGAGTCTCCCGACACAGGGGAGGATGAAGATGGTGGAGACGAGTCTGACCTG
Seq C2 exon
AGTTCTGAATCCAGTATCAAGAAGAAATTTCTCAAGAGGAGAGGGAAGACTGACAGCCCCTGGATCAAACCTGCTCGGAAAAGGAGGCGGAGAAGTAGAAAGAAGCCGAGCAGCATGCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036893-'9-11,'9-10,10-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.999 A=1.000 C2=0.923
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGATGACGAGGACCATGGA
R:
GTTTGATCCAGGGGCTGTCAG
Band lengths:
172-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: