DreEX6085330 @ danRer10
Exon Skipping
Gene
ENSDARG00000089078 | COL23A1
Description
collagen, type XXIII, alpha 1 [Source:HGNC Symbol;Acc:HGNC:22990]
Coordinates
chr21:32063109-32063505:-
Coord C1 exon
chr21:32063479-32063505
Coord A exon
chr21:32063350-32063403
Coord C2 exon
chr21:32063109-32063195
Length
54 bp
Sequences
Splice sites
3' ss Seq
ACATGGCTGTCCTGTGACAGGGT
3' ss Score
6.11
5' ss Seq
AAGGTTAGC
5' ss Score
5.61
Exon sequences
Seq C1 exon
GGAAAACAAGGTGAACCAGGATTAGAT
Seq A exon
GGTTTCCCAGGGCTTCAAGGAGAAAAGGGAGACAGAGGAGACAAGGGGGAGAAG
Seq C2 exon
GGCGAGAGAGGCTCAATAGGAAAGAAAGGTCTAAAAGGACAGAAGGGAGAGCAGGGACCTCCAGGGCTTGATCAGCCTTGTCCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000089078-'15-16,'15-15,16-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(9.9=100),PF0139113=Collagen=FE(11.3=100)
A:
PF0139113=Collagen=PD(3.7=16.7),PF0139113=Collagen=FE(23.9=100)
C2:
PF0139113=Collagen=PD(40.3=86.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAAACAAGGTGAACCAGGA
R:
CACAGGACAAGGCTGATCAAG
Band lengths:
114-168
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]