MmuEX0012231 @ mm10
Exon Skipping
Gene
ENSMUSG00000063564 | Col23a1
Description
collagen, type XXIII, alpha 1 [Source:MGI Symbol;Acc:MGI:2653243]
Coordinates
chr11:51574432-51577160:+
Coord C1 exon
chr11:51574432-51574458
Coord A exon
chr11:51576851-51576904
Coord C2 exon
chr11:51577074-51577160
Length
54 bp
Sequences
Splice sites
3' ss Seq
ACCTCTCATCCATCTGTCAGGGG
3' ss Score
6.92
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GGCAGACCTGGAGAACCAGGACTCGAT
Seq A exon
GGGTTCCCTGGACCCAGGGGAGAGAAGGGTGACCGAAGTGAACGTGGAGAGAAG
Seq C2 exon
GGGGAGCGAGGAGTTCCTGGCCGGAAAGGCGTGAAGGGCCAGAAGGGAGAGCCGGGCCCACCAGGCCTTGACCAGCCATGTCCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063564_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PU(14.8=88.9)
A:
PF0139113=Collagen=FE(24.6=100)
C2:
PF0139113=Collagen=PD(41.3=89.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGACCTGGAGAACCA
R:
CACAGGACATGGCTGGTCAAG
Band lengths:
114-168
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types