DreEX6085336 @ danRer10
Exon Skipping
Gene
ENSDARG00000005908 | clk4b
Description
CDC-like kinase 4b [Source:ZFIN;Acc:ZDB-GENE-050227-19]
Coordinates
chr21:32251355-32252156:-
Coord C1 exon
chr21:32252066-32252156
Coord A exon
chr21:32251708-32251774
Coord C2 exon
chr21:32251355-32251471
Length
67 bp
Sequences
Splice sites
3' ss Seq
TTTTTTCATCCGGTTTATAGATG
3' ss Score
7.81
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
AGAAGCCATCGCAGGAAAAGAACCAAGAGTATTGAGGATGATGAGGAGGGTCACCTGGTCTATCACAATGGAGACATGCTAAGAGCAAGAT
Seq A exon
ATGAGATTGTAGGGACTCTGGGAGAAGGAGCCTTTGGAAAAGTCGTGGAGTGCCTTGACCACACAAA
Seq C2 exon
AGGTAATGTAAGAGTGGCACTGAAAATCATCAAAAATATTGAGCGCTACCGTGAGGCAGCATTGTCAGAAGTTGATGTGCTTGAGCGGATAAACTCTCTCGATGATGAAAAGAGATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005908-'6-6,'6-5,7-6=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.516 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PU(0.1=0.0)
A:
PF0006920=Pkinase=PU(6.9=95.7)
C2:
PF0006920=Pkinase=FE(12.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCATCGCAGGAAAAGAACC
R:
TCCGCTCAAGCACATCAACTT
Band lengths:
177-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]