DreEX6087116 @ danRer10
Exon Skipping
Gene
ENSDARG00000098967 | RABGAP1
Description
RAB GTPase activating protein 1 [Source:HGNC Symbol;Acc:HGNC:17155]
Coordinates
chr10:8806097-8810360:-
Coord C1 exon
chr10:8810186-8810360
Coord A exon
chr10:8807497-8807654
Coord C2 exon
chr10:8806097-8806207
Length
158 bp
Sequences
Splice sites
3' ss Seq
TGTTGTATGTGTGTTTGTAGGTC
3' ss Score
9.48
5' ss Seq
CAGGTGAAC
5' ss Score
5.56
Exon sequences
Seq C1 exon
ACTGCTGGACCCTCAGAGCAGCACTGAGATTGCCAATTACCCCATTTACAAGATCCTCTTCTGTGTTCGTGGTCATGACGGGACGCCTGAGAGCGACTGCTTCGCATTCACTGAAAGCCATTACAACACCGAGATCTTCCGTATCCACGTCTTCCGCTGTGAGATCCAAGAGGCG
Seq A exon
GTCAGTCGAATACTCTACAGCTTTGCCACAGCATTCCGCAGATCAGCCAATAAAGCGCCACTCGCGACCAAGGCTCCGCCCCTCACACCAGACAGCGACGTCTTCACCTTTACCGTCAGCCTGGAGATCAAAGAGGATGACGGGAAGGGCACGTTCAG
Seq C2 exon
TGCCGTATCAAAAGACAAGGACAGACAGAGCTTCAAACTGCGGGCCGGCATGGACAAAAAAATTGTGATCTACGTCCAGCAAACGTCCAACAAAGAGCTGGCCATCGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098967-'2-3,'2-2,4-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=0.075 C2=0.026
Domain overlap (PFAM):
C1:
PF0064018=PID=FE(46.4=100)
A:
PF0064018=PID=PD(13.6=32.1),PF124733=DUF3694=PU(1.5=3.8)
C2:
PF124733=DUF3694=FE(27.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCAGCACTGAGATTGCCAA
R:
TTGTTGGACGTTTGCTGGACG
Band lengths:
253-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]