MmuEX6100918 @ mm10
Exon Skipping
Gene
ENSMUSG00000035437 | Rabgap1
Description
RAB GTPase activating protein 1 [Source:MGI Symbol;Acc:MGI:2385139]
Coordinates
chr2:37475292-37487176:+
Coord C1 exon
chr2:37475292-37475466
Coord A exon
chr2:37483728-37483885
Coord C2 exon
chr2:37487066-37487176
Length
158 bp
Sequences
Splice sites
3' ss Seq
CCTGACATCTCTGCTTATAGGTG
3' ss Score
8.4
5' ss Seq
TAGGTAGGC
5' ss Score
7.72
Exon sequences
Seq C1 exon
ACTTTTAGATCCTCAAACAAACACTGAAATAGCAAACTACCCTATCTACAAAATCCTCTTCTGTGTCAGAGGACATGATGGGACTCCTGAGAGTGACTGTTTTGCATTCACTGAAAGTCACTACAACGCAGAGCTCTTCAGGATACATGTCTTTCGCTGTGAAATACAAGAAGCT
Seq A exon
GTGAGCCGGATACTTTACAGTTTTGCCACCGCCTTCCGCCGCTCTGCCAAGCAGACCCCACTCTCAGCCACAGCTGCACCACAGACTCCTGACAGCGACATCTTTACCTTCTCTGTGTCTTTAGAAATAAAAGAAGATGATGGTAAAGGTTATTTTAG
Seq C2 exon
TGCTGTTCCCAAAGACAAGGACAGGCAATGCTTTAAACTTCGACAAGGAATTGATAAGAAGATTGTTATCTGTGTGCAGCAAACAGCTAACAAAGAACTTGCCATTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035437-'10-13,'10-12,11-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=0.094 C2=0.000
Domain overlap (PFAM):
C1:
PF0064018=PID=FE(46.4=100)
A:
PF0064018=PID=PD(13.6=32.1),PF124733=DUF3694=PU(1.5=3.8)
C2:
PF124733=DUF3694=FE(27.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACTGAAATAGCAAACTACCCT
R:
GCAAGTTCTTTGTTAGCTGTTTGC
Band lengths:
257-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types