RnoEX0073408 @ rn6
Exon Skipping
Gene
ENSRNOG00000009402 | Rabgap1
Description
RAB GTPase activating protein 1 [Source:RGD Symbol;Acc:1304691]
Coordinates
chr3:21725201-21732437:+
Coord C1 exon
chr3:21725201-21725405
Coord A exon
chr3:21728932-21729089
Coord C2 exon
chr3:21732327-21732437
Length
158 bp
Sequences
Splice sites
3' ss Seq
CCTGACATGTCTGCTTATAGGTA
3' ss Score
8.13
5' ss Seq
TAGGTAGAG
5' ss Score
3.22
Exon sequences
Seq C1 exon
ATTCTGAAGTGTCAAGTCCTTTCACACCAGTGGCTGATGAGGATAGTGTAGTTTTCAATAAACTAACTTACTTAGGCTGTGCCTCAGTAAATGCTCCCCGGAGTGAAGTGGAAGCCTTGAGGATGATGTCTATCTTGAGAAGTCAGTGTCAGATTTCTCTGGATGTAACCCTCTCAGTGCCGAATGTATCTGAAGGAACTGTGAG
Seq A exon
GTAAGCCGGATACTTTACAGTTTTGCCACCGCCTTCCGCCGCTCTGCCAAGCAGACCCCACTCTCAGCCACAGCTGCACCACAGACTCCTGACAGCGACATCTTTACCTTCTCTGTGTCTTTAGAAATAAAAGAAGATGATGGTAAAGGTTATTTTAG
Seq C2 exon
TGCTGTTCCCAAAGACAAGGACAGACAGTGCTTTAAACTGCGCCAGGGTATCGATAAGAAGATTGTCATCTGTGTGCAGCAAACAGCTAACAAAGAACTTGCCATTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009402_MULTIEX2-2/2=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.159 A=0.094 C2=0.000
Domain overlap (PFAM):
C1:
PF0064018=PID=PU(38.4=69.6)
A:
PF0064018=PID=PD(13.6=32.1),PF124733=DUF3694=PU(1.5=3.8)
C2:
PF124733=DUF3694=FE(27.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTCCTTTCACACCAGTGGC
R:
TCTTATCGATACCCTGGCGCA
Band lengths:
251-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]