BtaEX6046032 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000039172 | RABGAP1
Description
RAB GTPase activating protein 1 [Source:HGNC Symbol;Acc:HGNC:17155]
Coordinates
chr11:94147230-94152680:+
Coord C1 exon
chr11:94147230-94147404
Coord A exon
chr11:94147598-94147731
Coord C2 exon
chr11:94152570-94152680
Length
134 bp
Sequences
Splice sites
3' ss Seq
AACCTTGTTGTTGCTAAGAGTGT
3' ss Score
-15.52
5' ss Seq
CAAGTAATT
5' ss Score
3.86
Exon sequences
Seq C1 exon
ACTCTTAGATCCTCAGACAAACACTGAAATAGCAAACTACCCTATCTACAAAATCCTTTTCTGTGTCAGAGGGCATGATGGAACTCCTGAGAGTGACTGTTTTGCTTTCACTGAAAGTCATTACAATGCAGAGCTCTTCAGAATACATGTCTTTCGGTGTGAAATACAAGAAGCT
Seq A exon
TGTCAGAGGAGACCAATTGACCGCTGTTTAAATGCATTAAATCGGCATCTTGCTTCTAGCAATGACATATTTGCAAACTATTCTTATAGAATTAAACTTGGAGGATTATTCTTTATTACAATAAATATATTCAA
Seq C2 exon
CGCAGTTCCTAAAGATAAAGACAGACAATGCTTTAAACTCCGACAAGGAATTGATAAGAAGATTGTCATCTATGTGCAACAAACAACTAATAAAGAACTTGCCATTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039172-'14-11,'14-10,15-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064018=PID=FE(52.7=100)
A:
PF0064018=PID=PD(1.8=4.4),PF124733=DUF3694=PU(1.5=4.4)
C2:
PF124733=DUF3694=FE(27.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACTGAAATAGCAAACTACCCT
R:
TCACTGTCTGGAGTCTGAGGC
Band lengths:
253-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]