GgaEX6015581 @ galGal3
Exon Skipping
Gene
ENSGALG00000001225 | RABGAP1
Description
NA
Coordinates
chr17:9542292-9544194:+
Coord C1 exon
chr17:9542292-9542466
Coord A exon
chr17:9542785-9542942
Coord C2 exon
chr17:9544084-9544194
Length
158 bp
Sequences
Splice sites
3' ss Seq
TTGGTGCTGTGTAACTGCAGGTG
3' ss Score
7.7
5' ss Seq
CAGGTATAG
5' ss Score
8.73
Exon sequences
Seq C1 exon
ACTTTTAGATCCTCAGACGAACACAGAAATAGCAAATTATCCAATCTATAAAATCCTTTTCTGTGTACGAGGGCATGATGGGACCCCTGAATGTGATTGCTTTGCTTTCACTGAAAGCCACTACAATGCAGAACTCTTCAGGATTCACGTCTTCCGATGCGAGATTCAAGAGGCT
Seq A exon
GTGAGCCGAATACTGTACAGCTTTGCCACTGCCTTTCGTCGTTCTGCCAAACAAACTCCGCTCTCAGCCATTGCCACCCCACAGACTCCAGACAGTGATATTTTCACCTTCTCTGTGTCACTGGAAATCAAAGAAGATGATGGGAAAGGTTATTTCAG
Seq C2 exon
TGCAGTTCCCAAAGACAAGGACAGGCAGTGCTTTAAACTCCGCCAAGGAATAGATAAGAAGATAGTGATTTATGTCCAACAGACAACTAATAAGGAGCTTGCTATTGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001225-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=0.038 C2=0.000
Domain overlap (PFAM):
C1:
PF0064018=PID=FE(46.4=100)
A:
PF0064018=PID=PD(13.6=32.1),PF124733=DUF3694=PU(1.5=3.8)
C2:
PF124733=DUF3694=FE(27.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATCCTCAGACGAACACAGA
R:
GTCTGTTGGACATAAATCACTATCTT
Band lengths:
253-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]