DreEX6087272 @ danRer10
Exon Skipping
Gene
ENSDARG00000017047 | slc27a4
Description
solute carrier family 27 (fatty acid transporter), member 4 [Source:ZFIN;Acc:ZDB-GENE-050417-248]
Coordinates
chr10:10817084-10822267:+
Coord C1 exon
chr10:10817084-10817221
Coord A exon
chr10:10817368-10817532
Coord C2 exon
chr10:10822121-10822267
Length
165 bp
Sequences
Splice sites
3' ss Seq
AACTCTCTCTCTTCTCTCAGGGG
3' ss Score
10.37
5' ss Seq
CAGGTAATC
5' ss Score
6.99
Exon sequences
Seq C1 exon
GAGAGCCTGGTCAGCTGGTGGGTCGAATCATTCAGAACGACCCCCTCAGGCGATTTGATGGCTACGTCAATCAGACAGCCACTAATAAGAAAATTGCCCAGGATGTCTTCAAAAAGGGAGACAGTGCATATTTGTCAG
Seq A exon
GGGACGTGCTGGTGATGGACGACTTTGGCTATATGTATTTCAGAGATCGCACAGGAGACACGTTTCGCTGGAAAGGAGAAAACGTTTCCACTACTGAGGTTGAGGGAACACTGAGCCGACTGCTGGACATGAAAGATGTGGTGGTGTACGGAGTGGAGGTGCCAG
Seq C2 exon
GTGCTGAAGGTAAGGCAGGGATGGCAGCCATAGCAGACCCGGAAAACAATACTGACCTAGCCAAGTTTAGCAGGGACCTGGAGAAGGCCCTGCCACCCTATGCCCGTCCTGTGTTTCTGCGCTTTCTACCAGAAGTGGACAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017047-'13-13,'13-12,14-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.054 C2=0.100
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(10.6=100)
A:
PF0050123=AMP-binding=PD(5.5=42.9),PF131931=AMP-binding_C=PU(30.3=41.1)
C2:
PF131931=AMP-binding_C=FE(64.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTGGTGGGTCGAATCATT
R:
GAAACACAGGACGGGCATAGG
Band lengths:
244-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]