RnoEX6016215 @ rn6
Exon Skipping
Gene
ENSRNOG00000014369 | Slc27a4
Description
solute carrier family 27 member 4 [Source:RGD Symbol;Acc:1307383]
Coordinates
chr3:8372855-8373558:+
Coord C1 exon
chr3:8372855-8372992
Coord A exon
chr3:8373172-8373336
Coord C2 exon
chr3:8373412-8373558
Length
165 bp
Sequences
Splice sites
3' ss Seq
ACTAACTGTACCCTCCCTAGGTG
3' ss Score
9.45
5' ss Seq
CAGGTACGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GCCAGCCAGGCCAGCTGGTGGGTCGCATCATCCAGCAGGACCCCCTACGCCGTTTTGATGGCTACCTCAACCAGGGTGCCAACAACAAGAAGATTGCTAGTGATGTCTTCAAGAAAGGGGACCAAGCCTACCTCACTG
Seq A exon
GTGACGTGCTGGTGATGGATGAGCTGGGCTACCTGTACTTCCGAGACCGCACAGGGGACACGTTCCGCTGGAAAGGGGAGAATGTGTCTACCACTGAAGTGGAGGGCACACTCAGCCGCCTGCTTCAGATGGCAGATGTGGCTGTTTATGGTGTTGAGGTGCCAG
Seq C2 exon
GAGCTGAGGGCCGAGCAGGAATGGCTGCTGTGGCAAGCCCCACTAGCAACTGTGACCTGGAGAGCTTTGCACAGACCTTGAAAAAGGAGCTGCCCCTGTACGCCCGCCCCATCTTCCTCCGCTTCTTGCCTGAGCTGCACAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014369-'16-19,'16-18,17-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.054 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(10.6=100)
A:
PF0050123=AMP-binding=PD(5.5=42.9),PF131931=AMP-binding_C=PU(30.3=41.1)
C2:
PF131931=AMP-binding_C=FE(64.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCCTACGCCGTTTTGATG
R:
TTTTGTGCAGCTCAGGCAAGA
Band lengths:
242-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]