MmuEX6100098 @ mm10
Exon Skipping
Gene
ENSMUSG00000059316 | Slc27a4
Description
solute carrier family 27 (fatty acid transporter), member 4 [Source:MGI Symbol;Acc:MGI:1347347]
Coordinates
chr2:29812265-29812934:+
Coord C1 exon
chr2:29812265-29812402
Coord A exon
chr2:29812552-29812716
Coord C2 exon
chr2:29812788-29812934
Length
165 bp
Sequences
Splice sites
3' ss Seq
ACTAACTGTCCCCTCCCTAGGTG
3' ss Score
11.2
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
GTCAGCCAGGCCAGCTGGTGGGTCGCATCATCCAGCAGGACCCTCTGCGCCGTTTCGACGGGTACCTCAACCAGGGTGCCAACAACAAGAAGATTGCTAATGATGTCTTCAAGAAGGGGGACCAAGCCTACCTCACTG
Seq A exon
GTGACGTCCTGGTGATGGATGAGCTGGGTTACCTGTACTTCCGAGATCGCACTGGGGACACGTTCCGCTGGAAAGGGGAGAATGTATCTACCACTGAGGTGGAGGGCACACTCAGCCGCCTGCTTCATATGGCAGATGTGGCAGTTTATGGTGTTGAGGTGCCAG
Seq C2 exon
GAACTGAAGGCCGAGCAGGAATGGCTGCCGTTGCAAGTCCCATCAGCAACTGTGACCTGGAGAGCTTTGCACAGACCTTGAAAAAGGAGCTGCCTCTGTATGCCCGCCCCATCTTCCTGCGCTTCTTGCCTGAGCTGCACAAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059316_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.054 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(10.6=100)
A:
PF0050123=AMP-binding=PD(5.5=42.9),PF131931=AMP-binding_C=PU(30.3=41.1)
C2:
PF131931=AMP-binding_C=FE(64.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCGCATCATCCAGCAGG
R:
CAAGAAGCGCAGGAAGATGGG
Band lengths:
246-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types