GgaEX1053191 @ galGal4
Exon Skipping
Gene
ENSGALG00000004965 | SLC27A4
Description
solute carrier family 27 (fatty acid transporter), member 4 [Source:HGNC Symbol;Acc:HGNC:10998]
Coordinates
chr17:4974922-4975978:-
Coord C1 exon
chr17:4975841-4975978
Coord A exon
chr17:4975518-4975682
Coord C2 exon
chr17:4974922-4975068
Length
165 bp
Sequences
Splice sites
3' ss Seq
AATCTGTCACTTTCCTGTAGGGG
3' ss Score
8.53
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
GGGAGCCGGGGCAGCTGGTGGGCCGCATTGTCAAGAGCAACCCCCTGCAGCACTTCGATGGCTACCTGAATCAGTCAGCCACCAGCAAGAAAATTGCCAGGGACGTGTTTGCAAAAGGGGATGCTGCCTATCTCACAG
Seq A exon
GGGATGTCCTGGTGATGGACAAATACGGTTACATGTACTTTCGGGACCGCACTGGAGACACATTCCGCTGGAAGGGAGAGAACGTCTCCACTACTGAAGTGGAGGGGACGCTGAGCCGCATCCTCAACCTGACAGACGTGGTTGTGTATGGGGTGGAGATCCCAG
Seq C2 exon
GCATTGAGGGGAAGGCAGGAATGGCAGCCATTGCCGACCCAGAGAACTCATGTGACCTGGAGGGCTTTGCCAGCCAGCTGAAAAAGGCCCTGCCGCTGTATGCACAGCCTGTCTTCCTACGGTTCCTGCACGAGGTCTCCAAAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004965_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.036 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(10.6=100)
A:
PF0050123=AMP-binding=PD(5.5=42.9),PF131931=AMP-binding_C=PU(30.3=41.1)
C2:
PF131931=AMP-binding_C=FE(64.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGTCAAGAGCAACCCCCTG
R:
TGTTTTGGAGACCTCGTGCAG
Band lengths:
258-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]