DreEX6087622 @ danRer10
Exon Skipping
Gene
ENSDARG00000051896 | fbn2a
Description
fibrillin 2a [Source:ZFIN;Acc:ZDB-GENE-090112-4]
Coordinates
chr10:16387881-16392463:-
Coord C1 exon
chr10:16392338-16392463
Coord A exon
chr10:16389609-16389734
Coord C2 exon
chr10:16387881-16388006
Length
126 bp
Sequences
Splice sites
3' ss Seq
CGCTTTTTTTATGTGTTCAGACA
3' ss Score
7.16
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
ATATTGACGAATGTCATGAAATCCTGGGAGTTTGTGCTCATGGTGTGTGTATAAACCACATGGGCAGTTTCCACTGCGAGTGTCCCACTGGCTTTCTTTATAATGACCTGCTGCTCATCTGTGAAG
Seq A exon
ACATTGATGAATGCAGCAGCAGAGAGCCTGTGTGTCAGAGAAATGCAGACTGCATCAACCGTCCAGGCGGTTATCAGTGTGAATGTTCTGATGGGTATATACTCACACCTAATGGAGACTGTAATG
Seq C2 exon
ACCGTAATGAGTGCTTGGAGACACCCAGTGTGTGTCGTCATGGTGACTGTGTGGATATTCCAGGAGGGTATGAGTGCATGTGCCACACAGGATTTACAGTAACACCAAACCGCAGGATGTGTGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000051896-'52-58,'52-57,53-58=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.3),PF062476=Plasmod_Pvs28=PU(29.4=81.4),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF062476=Plasmod_Pvs28=FE(35.3=100),PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF062476=Plasmod_Pvs28=PD(34.5=95.3),PF0764510=EGF_CA=WD(100=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAATGTCATGAAATCCTGGGA
R:
TACACACATCCTGCGGTTTGG
Band lengths:
245-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]