DreEX6088160 @ danRer10
Exon Skipping
Gene
ENSDARG00000056985 | tpte
Description
transmembrane phosphatase with tensin homology [Source:ZFIN;Acc:ZDB-GENE-030131-5503]
Coordinates
chr10:24726092-24726542:+
Coord C1 exon
chr10:24726092-24726155
Coord A exon
chr10:24726297-24726361
Coord C2 exon
chr10:24726482-24726542
Length
65 bp
Sequences
Splice sites
3' ss Seq
AGTGGGTTCTCTCTCTCCAGAAA
3' ss Score
9.03
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
GTTTCAGAGAACAAAAGACGGTACCAAAAAGATGGATTTGATCTGGACCTCACATACGTTACAG
Seq A exon
AAAGAGTCATCGCCATGTCTTTTCCATCTTCTGGGAAGCAGGCGCTTTATAGGAACCCAATTAGA
Seq C2 exon
GAGGTCGTTAGATTCTTGGACACCAAACATATGGATCATTACAAGGTTTTTAATCTCTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056985-'9-12,'9-11,10-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PD(5.0=22.7)
A:
PF0078215=DSPc=PU(5.4=31.8)
C2:
PF0078215=DSPc=FE(15.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGAGAACAAAAGACGGTACCA
R:
TGCAGAGATTAAAAACCTTGTAATGA
Band lengths:
122-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]