BtaEX6055994 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MYA3]
Coordinates
chr12:21762612-21773184:+
Coord C1 exon
chr12:21762612-21762675
Coord A exon
chr12:21763436-21763500
Coord C2 exon
chr12:21773124-21773184
Length
65 bp
Sequences
Splice sites
3' ss Seq
GTGACTGTTTTGACTTCCAGAGC
3' ss Score
8.13
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
GTTTCAGGAAACAAACGGCGGTACAAGAAGGATGGATTTGACTTAGACCTCACTTATGTTACTG
Seq A exon
AGCGTATTATTGCCATGTCATTCCCATCTTCTGGAAAGCAGTCTTTCTACAGGAATCCCATTAAG
Seq C2 exon
GAAGTTGTGCGGTTCCTGGATACCAAGCACCCAAACCACTATCAAGTTTACAATCTCTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011654-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0078215=DSPc=PU(3.9=22.7)
C2:
PF0078215=DSPc=FE(15.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGGAAACAAACGGCGGTAC
R:
TGCAGAGATTGTAAACTTGATAGTGG
Band lengths:
122-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]