HsaEX7007724 @ hg38
Exon Skipping
Gene
ENSG00000217576 | RP11-248G5.8
Description
NA
Coordinates
chr13:52258529-52280715:-
Coord C1 exon
chr13:52280652-52280715
Coord A exon
chr13:52279841-52279905
Coord C2 exon
chr13:52258529-52258590
Length
65 bp
Sequences
Splice sites
3' ss Seq
GTGATGATTTTGACTTCCAGAAC
3' ss Score
7.45
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GTTTCAGGAAACAAAAGGTGATACGAAAGTGATGGATTTGACCTAGACCTCACTTATATTACAG
Seq A exon
AACATATTGTCGCTATGTCGTTTCCATCTTCGGGAGGCCAGTCTTTCTATCGGAATCCAATTAAG
Seq C2 exon
GAAGTCATACAGTTTCTAGACAAAGAAACATCCAAACCACTATCGAGTCTACAATCTATGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000217576-'5-7,'5-5,6-7=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGGAAACAAAAGGTGATACGA
R:
TGCATAGATTGTAGACTCGATAGTGG
Band lengths:
123-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains