MmuEX6034807 @ mm10
Exon Skipping
Gene
ENSMUSG00000031481 | Tpte
Description
transmembrane phosphatase with tensin homology [Source:MGI Symbol;Acc:MGI:2446460]
Coordinates
chr8:22335613-22345045:+
Coord C1 exon
chr8:22335613-22335676
Coord A exon
chr8:22336495-22336559
Coord C2 exon
chr8:22344985-22345045
Length
65 bp
Sequences
Splice sites
3' ss Seq
GCAATTACTTTGACTTCCAGAGC
3' ss Score
5.4
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GTATCGGGTAACAAGCGACGCTACAAGAAGGATGGCTTTGACCTAGACCTCACTTACGTCACTG
Seq A exon
AGCGTATTATTGCCATGTCATTTCCATCGTCTGGAAGGGAGTCCTTCTACAGAAATCCAATCAAG
Seq C2 exon
GAGGTTGTGCGGTTCCTGGATACCAAGCACCCAAACCACTATCAAGTCTACAATCTATGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031481-'18-24,'18-17,23-24=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PD(5.9=27.3),PF145661=PTPlike_phytase=FE(14.3=100)
A:
PF145661=PTPlike_phytase=FE(14.3=100)
C2:
PF145661=PTPlike_phytase=FE(13.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATCGGGTAACAAGCGACGC
R:
GATTGTAGACTTGATAGTGGTTTGGG
Band lengths:
119-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types